Quantitative Environmental & Public Health Microbiology

Water and Environmental Microbiology Testing Lab Specializing in Digital PCR

Quantitative digital PCR (dPCR) microbiology for water utilities, environmental and public health agencies, regulators, and researchers. CA ELAP accredited laboratory headquartered in San Diego, California.

Microbial Source Tracking

Identifying the origin of fecal contamination in water bodies and stormwater conveyance systems. Human-associated markers including the HF183 assay (US EPA Method 1696), plus animal-source assays for cow (CowM2/CowM3), dog (DG3/DG37), avian (GFD), pig (Pig2Bac), ruminant (Rum2Bac), and customized panels. Combined with our pioneering CSI-MST method to pinpoint compromised sewer infrastructure.

Microbial and Pathogen Quantification

Sensitive, absolute quantification of pathogens by digital PCR. Targets include norovirus GI, norovirus GII, adenovirus, Cryptosporidium, Giardia, Campylobacter, Salmonella, E. coli O157:H7, Legionella pneumophila, and respiratory pathogens such as SARS-CoV-2, influenza A/B, and RSV.

Water Reuse Microbiology

Pathogen and indicator monitoring for direct and indirect potable reuse. Log reduction value (LRV) verification, surrogate analysis, and compliance support for California Title 22 and federal recycled water frameworks.

ENVIRONMENTAL DNA QUANTIFICATION

Species-level eDNA detection and quantification by digital PCR. Endangered species monitoring, invasive species surveillance, and biodiversity assessment.

Regulatory & Compliance Testing

H2O Molecular also performs culture-based coliphage analysis, both somatic and male-specific (F+) coliphages, per US EPA Methods 1601, 1602, 1642, and 1643, supporting Groundwater Rule, LT2, and recycled water compliance monitoring.

Available Assays and Panels

Our laboratory offers a wide range of validated assays and panels, including but not limited to:

Microbial Source Tracking
  • Human-associated fecal assays (HF183, HumM2, PMMoV, crAssphage, and others)
  • Animal-source fecal assays (cow, dog, ruminant, avian, pig, and others)
  • US EPA-patented MST assays
  • Viral tracer panel
  • Respiratory pathogen panel (SARS-CoV-2, influenza A/B, RSV)
  • Enteric pathogen panel (norovirus GI, norovirus GII, Campylobacter, Cryptosporidium, Giardia, E. coli O157:H7, and others)
  • Vibrio pathogen panel (V. cholerae, V. vulnificus, V. parahaemolyticus, and others)
  • Oyster enteric pathogen panel (norovirus, hepatitis A, and others)
  • Antimicrobial resistance (AMR) panels
  • Endangered species eDNA assays
  • Invasive species eDNA assays
  • Wastewater Biopsies (WWBx)
  • Environmental gene expression

Who We Are

Quantitative Environmental & Public Health Microbiology

H2O Molecular is a CA ELAP accredited water microbiology laboratory specializing in quantitative digital PCR. Our team pioneered the Collection System Investigation Microbial Source Tracking (CSI-MST) methodology and was among the first laboratories in the United States to detect SARS-CoV-2 in wastewater, work that helped establish the field of wastewater-based epidemiology. Today we deliver actionable microbial data to municipalities, water and wastewater utilities, environmental and public health agencies, regulators, consultants, and academic researchers across drinking water, wastewater, stormwater, recycled water, surface water, groundwater, and marine samples.
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